A list of academic publications I have contributed to.
3 Posts
Partial order alignment is a common method to compute multiple sequence alignments through iterative sequence-to-graph alignment. In this paper, we introduce a new algorithm that accelerates alignment by exploiting graph topology and shared sequence between the query and the graph.
More than half of the women in the US get a urinary tract infection (UTI) in their lifetime, which frequently becomes recurrent. In this paper, we investigated the role of the gut microbiome in facilitating recurrence.
StrainGE is a toolkit for tracking and characterizing low-abundance strains in complex microbial communities. It enables detailed insights into the bacterial strain-level diversity of whole metagenomic sequencing samples.
